#NEXUS

BEGIN TREES;

Tree speceiesTree = ((((a,b),c),d),e);
Tree geneTree1 = ((((a,b),c),d),e);
Tree geneTree2 = ((a,b),((c,e),d));
Tree geneTree3 = ((a,c),((b,e),d));

END;


BEGIN PHYLONET;

DeepCoalCount {speceiesTree} {geneTree1, geneTree2, geneTree3} -u;

END;
===

DeepCoalCount {speceiesTree} {geneTree1, geneTree2, geneTree3} -u
Species_Tree#1 = ((((a:0,b:0):1,c:0):2,d:0):0,e:0):0;
Total number of extra lineages: 3
===
